Introducing R and RStudio IDE

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rstudio default session

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rstudio default session

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rstudio default session

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rstudio default session

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rstudio default session

Introduction to the example dataset and file type

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variant calling workflow. Sequence reads (FASTQ files), Quality control (FASTQ files), Alignment to Genome (SAM/BAM files), Alignment cleanup (BAM file ready for variant calling), Variant Calling (VCF file)

Data Visualization with ggplot2

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Line plot enclosed in hexagon shape with ggplot2 typed beneath and www.rstudio.com at the bottom.

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Where to find the data frame View option
RStudio data frame view

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R Basics

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Warning which shows with a red x where RStudio identifies a possible syntax error
RStudio script warning

R Basics continued - factors and data frames

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Menu on where to find the Excel import feature
RStudio import menu

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Import screen of Excel file in RStudio showing a data preview and the code used for import
RStudio import screen

Data Wrangling and Analyses with Tidyverse

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rstudio default session

Getting help with R

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rstudio default session

Using packages from Bioconductor

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screenshot of bioconductor homepage

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screenshot of bioconductor search